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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015862097.1_cds_XP_016515183.1_27559
CDS Infomation

[gene=LOC107831895] [db_xref=GeneID:107831895] [protein=germinal center kinase 1-like] [protein_id=XP_016515183.1] [location=join(62847..62941,66975..67031,68497..68524,68618..68740,70298..70409,70799..70836,70939..70992,71206..71274,71490..71606,71742..71810,74238..74317,74871..74999,75069..75342,75942..76046,76145..76312,76726..76853,76941..77079,78070..78131,78315..78506,78868..78904)] [gbkey=CDS]
Sequence

ATGGCTGATGCTGCTGCTCTTATTGAAGCCTCAGGATCCAGATTTAGTGATCTTGAGCTC
ATCGGAAGAGGCTCGTTTGGTGACGTCTATAAAGGGTTTGACAAGGAACTCAACAAAGAG
GTTGCAATCAAGGTTATTGATCTAGAAGAATCGGAGGATGAAGTTGAGGATATCCAAAAG
GAAATTGCAGTTTTATCACAATGTCGATCTCCCTATATTACGGAGTACTATGGGTCATAC
CTGCACCAAACTAAGCTATGGATAATAATGGAATACATGGCTGGTGGCTCAGTTGCTGAT
CTAATTCAACCAAATCAGCCATTGGATGAAATGTCTATTGCATGCATTTTACGTGATTTG
CTTCATGCGGTTGAATACCTCCACTCTGAAGGCAAAATTCATCGCGATATCAAAGCGGCT
AATATCTTGCTCTCAGAAAATGGTGATGTGAAGGTAGCAGATTTTGGCGTTTCTGCACAG
CTGACAAGGACGATCTCTAGGAGAAAGACATTTGTAGGAACACCATTCTGGATGGCACCT
GAAGTAATTCAGAACTCAGAAGGATACAATGAGAAGGCCGATATTTGGTCACTTGGTATA
ACTGCAATTGAGATGGCCAAAGGGGAACCCCCACTTGCTGATCTGCACCCCATGAGAGTA
CTTTTTATCATACCTCGAGAAAATCCTCCCCAGCTAGAGGAACACTTTTCTCGTCCTCTC
AAGGAATTCGTGTCCTTGTGTTTGAAGAAGAGTCCTACTGAGAGGCCAAGTGCAAAGGAA
CTACTGAAGCATCGTTTCATAAGGAATGCAAGAAAAAGCCCCAGACTTTTAGAGAGAATC
AGGGAGCGCCCCAAGTTTGAAATAAAGGATGATATTGATTCCCCTAGGAATGGCCTGAAA
CCTGTAGGGGAAGCATCAGGCACCGTTAAGGTGACAAGAGATACGGGTACTGAAGACACT
GTTAAAGTCAGTGGCCAGGGGAAGACCCTAAAAACTGCTGGATGGGACTTCAGCATTGGA
GGATCATCTAGTACTGGAACTGTCCGAAGTGTGAAACCACCACAGGTTAGAGATAGGAAA
CCAGAAGTTCCATTGAATCAACCTGCTTCAAGAAAAAATCTGGACAGTGGTAACAATTGG
TCCTCTGCTTCTGGAACTATTCTTTATAACTCATCTGAGGGTTTCAGCCAAAAAGACGAT
GGAGATGCAAACAACAATGAGAAAAGAGATTATTCTCGTGAAGATGAGGAATTATCAGTG
AGTGGTACTGGAACAGTGGTTGTGAGATCTCCAAGAGGATCTCCTAGAGGATTTCAGTCC
TCCTCTTTGTTCAGCGACCAGAGTTCCCCGTCCAGTAGCACACTTGCTTCTTTCGAGGAT
GCTTCTTCCAGTGGCACTGTAGTTTATCGTGGACGTCATGATGACCCAGATTCTCCTCGA
ACGCCAAAATCTAGGTTAGGAATTCAAGAGAGATCTTCAAGTGCATCACTTGAAGATAGT
ACAACAAACCTTGCCGAGGCCAAGGCTGCCATGATAGCAGGACCAAAGAAAGGAAATGTT
AGAGACAGATCGAAATTGGGCAAGGTCCAACGTGATGGGTTAGAAAATAAAACAGAACAA
TCAACAACGAGCTCTGATTCTTCTAGGCACTCTCGCGACTATCTTGATGCGCAGAAGGTG
TTTTCAAGATCGCGCCATGCAAGTGATGAAGAAGATGGTGCGAGAACATATGCTGCACCT
TCATCTGCCACCTTATCTGTTCTCCTCATTCCTTCACTAAAAGAGACTGTAGAAATAGTT
TGTGGCATTGCATCATCTTACTTTCATTTGAAGCATTACAAATTACTAGTAGAAACTCTT
TGCAGCTCAAAGGAGTCATCTTTGAAAGATCTGCAAGACCTTGCTGCTCGCATCTTTGCA
AAGGGAAAGATTGAAACAGAGAGTACAAGTACCGGGGTTGATAGCAAGAAAAAACAGCAG
AGTAAAGAGCTTAATTCAAATGCGAATTTGAGTCCACTGGCAAGGTTCTTGCTTTCAAGA
TGGCAAGGACATGCTTCTCGAGATCAAAATGCTTAA

Peptide Sequence

PEP ID

XP_016515183.1
PEP Infomation

PREDICTED: germinal center kinase 1-like [Nicotiana tabacum]
Sequence

MADAAALIEASGSRFSDLELIGRGSFGDVYKGFDKELNKEVAIKVIDLEESEDEVEDIQK
EIAVLSQCRSPYITEYYGSYLHQTKLWIIMEYMAGGSVADLIQPNQPLDEMSIACILRDL
LHAVEYLHSEGKIHRDIKAANILLSENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAP
EVIQNSEGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLEEHFSRPL
KEFVSLCLKKSPTERPSAKELLKHRFIRNARKSPRLLERIRERPKFEIKDDIDSPRNGLK
PVGEASGTVKVTRDTGTEDTVKVSGQGKTLKTAGWDFSIGGSSSTGTVRSVKPPQVRDRK
PEVPLNQPASRKNLDSGNNWSSASGTILYNSSEGFSQKDDGDANNNEKRDYSREDEELSV
SGTGTVVVRSPRGSPRGFQSSSLFSDQSSPSSSTLASFEDASSSGTVVYRGRHDDPDSPR
TPKSRLGIQERSSSASLEDSTTNLAEAKAAMIAGPKKGNVRDRSKLGKVQRDGLENKTEQ
STTSSDSSRHSRDYLDAQKVFSRSRHASDEEDGARTYAAPSSATLSVLLIPSLKETVEIV
CGIASSYFHLKHYKLLVETLCSSKESSLKDLQDLAARIFAKGKIETESTSTGVDSKKKQQ
SKELNSNANLSPLARFLLSRWQGHASRDQNA

Transcript Sequence

Gene sequence data has not been registered.